Fast Graph-based Algorithms for Analyzing Protein-Protein Interaction Networks

Shen, Yue.


  • Protein-protein interaction (PPI) networks represent contacts between proteins in the cell. Some proteins in the networks are missing labels that describe their functions. In practice, we look at their 'neighborhood' and predict their functions based on the information from 'neighbors'. To find appropriate neighbors, [11] gives a new metric, the diffusion state distance (DSD), to capture ... read more
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